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Year : 2022, Volume : 46, Issue : 1
First page : ( 26) Last page : ( 32)
Print ISSN : 0250-4758. Online ISSN : 0973-970X. Published online : 2022  28.
Article DOI : 10.5958/0973-970X.2022.00004.9

Patho-epidemiological study of Streptococcus suis infections in slaughtered pigs from North and North-Eastern Region, India

Dinesh Murali1, Thakor Jigarji Chaturji1, Singh Karam Pal2, Singh Rajendra1, Anbazhagan Subbaiyan3, Chauhan Renu4, Qureshi Salauddin4, Sahoo Nihar Ranjan5, Sahoo Monalisa1,*

1Division of Pathology, ICAR-Indian Veterinary Research Institute, Bareilly-243122, India

2Centre for Animal Disease Research and Diagnosis, ICAR-Indian Veterinary Research Institute, Bareilly-243122, India

3Division of Bacteriology & Mycology, ICAR-Indian Veterinary Research Institute, Bareilly-243122, India

4Division of Biological Standardization, ICAR-Indian Veterinary Research Institute, Bareilly-243122, India

5ICAR-International center for Foot and Mouth Disease, Argul, Khordha, Odisha, India.

*Address for Correspondence, Dr Monalisa Sahoo, Division of Pathology, ICAR-Indian Veterinary Research Institute, Bareilly-243122, Uttar Pradesh, India, E-mail: vety.lisa@gmail.com

Online Published on 28 July, 2022.

Received:  10  November,  2021; Accepted:  03  ,  2022.

Abstract

Streptococcus suis, is widely distributed in all pig rearing countries causing huge economic loss to the pork industry. However, the information about the epidemiology of this pathogen with the associated pathologies in Indian pigs is very limited. The study was conducted using pathological, immunohistochemistry, and molecular detection methods from four states of India viz. Uttar Pradesh (Lucknow), Uttar Pradesh (Bareilly), Delhi, Assam (Guwahati), and Punjab (Chandigarh). Out of 664 morbid tissues of slaughtered pigs, 41 cases (6.14%) were found to be positive for S. suis by PCR assay by amplifying gdh gene. The highest rate of prevalence was recorded in Bareilly (24%) while lowest in Guwahati (4.44%). Age wise significantly higher prevalence was recorded in growers followed by finishers. Lungs (58.5%) showed more tropism for S. suis showing predominant pathological lesions of bronchopneumonia. The microscopic lesions in lungs, palatine tonsils, spleen, lymph nodes and brain of naturally affected pigs corroborated well with the distribution of S. suis antigen in these organs on immunohistochemistry. The phylogenetic analysis showed close homology to the isolates of Japan, United Kingdom and China. The study shows that S. suis in slaughtered pigs could be a potential cause of serious public health concern.

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Keywords

Immunohistochemistry, Pathology, Phylogenetic analysis, Prevalence, S. suis, Slaughtered pigs.

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Introduction

In recent years, piggery has gained enormous popularity amongst Indian farmers because of its ability to convert low quality feed to pork, quick and fast returns, large litter size and fast growth rate. Recent livestock census report revealed the decline in pig population by 12.03% as compared to the previous census report, which might be due to various disease outbreaks affecting the economic viability and profitability of swine industry1. There is an increasing trend in porcine bacterial diseases in several countries of the world among which Streptococcus suis has emerged as an emerging zoonotic pathogen to both pigs and human due to increasing intensification of farrowing management. Streptococcus suis (SS) is considered to be one of the most important bacterial pathogens, responsible for causing frequent outbreaks of meningitis, septicemia, endocarditis, arthritis, pneumonia, abortions and abscessation in pigs, and severe outbreaks of meningitis, septicemia, permanent hearing loss and endocarditis in human beings2. After its first report in the early 1960s, it emerged as the most common cause of bacterial meningitis in pigs in the UK and nearly 30 other countries, causing over 300-million-dollar loss in the United States alone3.

The prevalence of S. suis infection in pigs and humans, is now recognized worldwide, with cases reported in several pig producing countries4-6. The growing evidence suggests that the slaughtered pigs are the major reservoir of this pathogen4. In East and Southeast Asia, S. suis zoonosis is considered endemic due in part to the high density of pigs, relatively high number of backyard production farms, unhygienic slaughtering practices, wet markets, and consumption of undercooked pork products4. Since, similar types of practices are followed in India and a few sporadic reports of this zoonotic pathogen on local areas are in print7,8, the authors hypothesize that the prevalence rate could be much higher and the prevalence is underreported. Therefore, the study intended to explore the magnitude of S. suis in Indian pigs, of distant locations with high density of pig population in Uttar Pradesh and North-eastern state.

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Materials and Methods

A total of 664 tissue samples including tonsils (187), lungs (205), lymph nodes (56), spleen (164) and brain (52), were collected during August, 2017 to May 2018 at necropsy from the slaughterhouses at Lucknow, Bareilly, Delhi, Guwahati, and Chandigarh (Table 1). The representative tissues of palatine tonsils, lungs, lymph nodes, spleen and brain of slaughtered pigs were collected in 10% neutral buffered formalin (NBF) for histopathology and immunohistochemistry, and tissues were also stored in sterile cryovials at-20°C for the molecular diagnosis.

Processing of tissues and histopathology

The NBF fixed tissues were processed for paraffin wax embedding followed by taking the sections of 4-5 μm thickness from paraffin blocks and stained with standard hematoxylin and eosin stains as per the protocol of Bancroft and Gamble9. The histopathological alterations were photographed using upright microscope (Olympus, BX3, Japan and 5 Mega Pix Jenoptic Camera).

Immunohistochemistry

Theduplicate paraffin tissue sections of 4-5μm thickness were placed on APES (Aminopropyltriethoxysilane, Sigma-Aldrich) coated slides. The tissue sections of 4-5 μm thickness were deparaffinized in xylene and rehydrated through descending grades of alcohol to distilled water. The sections were blocked with 3% H2O2 in phosphate buffer saline (PBS) for 20 minute followed the antigen retrieval with citrate based antigen unmasking solution (pH 6.0, 0.01 M) (Vector laboratories) in a microwave oven (800 W) for 20 min. The slides were incubated with 5% normal goat serum in PBS (pH 7.4) for 30 min at RT to avoid non-specific binding of antibodies. Afterwards, the sections were incubated overnight with in-house raised rabbit polyclonal S. suis antibodies (1:50 dilution) at 4°C in a humidified chamber. For negative control (antibody control), the sections were incubated with only PBS. After overnight incubation, the slides were rinsed in PBS (5 min) and incubated with anti-rabbit Goat peroxidase (Sigma-Aldrich, USA, Cat # A0545) at dilution of 1:200 with PBS containing 1% bovine serum albumin and incubated for 1 h at RT. After washing thrice for 5 min each, DAB (Sigma-Aldrich, USA, Cat # D3939) enhanced liquid substrate was put for 30 sec for the development of the brown colour followed by counterstaining with Mayer’s Hematoxylin. Then, the sections were mounted with aqueous mounting medium (CC mount, Sigma-Aldrich) and viewed under the microscope (Olympus BX-41, Japan) for positive signals.

Molecular diagnosis

DNA extraction from tissues of pigs

DNA was isolated from morbid tissue samples of pigs using DNeasy Blood and Tissue Mini Kits (Qiagen, USA) as per manufacturer’s instructions. The extracted DNA was quantified in a NanoDrop spectrophotometer and the purity was checked by measuring the absorbance (A260/A280). For the detection of S. suis, PCR was performed using 200 ng of the extracted genomic DNA as template, primer of forward 5‘GCAGCGTATTCTGTCAAACG3’, reverse 5‘CCATGGACAGATAAAGATGG3’ flanking 566 bp region of gdh gene10. Thermal cycle conditions were: initial denaturation at 95°C for 5 min; 35 cycles of denaturation at 94°C for 1 min, annealing at 58°C 1 min, extension at 72°C for 1 min, and final extension at 72°C for 7 min. The amplified products were resolved by ethidium bromide stained agarose gel electrophoresis (1.5% w/v) at 75 V for 1 h in TAE buffer, and viewed under UV transilluminator (Geldoc, USA). The detection of Mycoplasma hyopneumoniae in positive cases of S. suis was done as per published report11.

Sequencing of PCR amplicons and phylogenetic analysis

The amplified PCR products were purified by using Gene JET PCR purification kit (Thermo Fisher Scientific, USA) and then sequenced in both directions using commercial sequencing services (Eurofins, Bangalore). Forward and reverse nucleotide sequences were curated and aligned using MEGA 10.0 software followed by BLAST analysis (http://blast. ncbi. nlm. nih. gov/) to find out the most related sequences. The evolutionary history was inferred by using the Maximum Likelihood method based on the Tamura 3-parameter model12. The bootstrap consensus tree inferred from 500 replicates was taken to represent the evolutionary history of the taxa analyzed. There were a total of 21 nucleotide sequences with 609 positions in the final dataset. Evolutionary analyses were conducted in MEGA 10.

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Results

Out of 664 morbid tissue samples showing gross lesions, 41 samples (6.14%) were positive for S. suis DNA. The percentage frequency occurrence of positivity was more in the samples of Bareilly region (24.0%) while the lowest in Lucknow (5.45%) in the analyzed tissue samples. Out of different organs tested, lungs (58.5%) showed significantly higher detection for S. suis followed by palatine tonsils (26.8%). However, brains (2.4%) showed least number of positivity. The prevalence of S. suis infection in morbid tissue samples is presented in Table 1. Age wise significantly higher prevalence (P<0.05) was recorded in growers followed by finishers.

Out of 205 lungs showing pneumonic lesions, 24 cases were detected positive for S. suis. Among these cases (24), 15 lungs had lesions of bronchopneumonia, 5 cases had interstitial pneumonia, and 3 cases had enzootic pneumonic like lesions based on histopathological investigation. The enzootic pneumonic cases were further confirmed by using M. hyopneumoniae specific primer targeting 16srRNA gene amplifying 649bp. Out of 15 bronchopneumonic cases, the majority of the lungs showed the acute bronchopneumonia (6) followed by haemorrhagic pneumonia (4), sub-acute bronchopneumonia (2), sero-fibrinous bronchopneumonia (2) and necrotizing pneumonia (1). The bronchopneumonia lungs appeared congested, enlarged and consolidated cranio-ventral lobe (Fig 1a). Histopathologically, the small airways and air spaces were severely infiltrated with neutrophilic exudates (Fig 1b). In interstitial pneumonia, the affected lungs were pale in appearance, non-collapsible, meaty consistency interspersed with emphysema in various lobes of the lungs (Fig 1c). Histopathologically, lymphocytes, and mononuclear cells and macrophages were seen in large numbers in the alveolar septa (Fig 1d) and small amount of serofibrinous exudates in air spaces. The enzootic pneumonic cases with presence of S. suis showed the consolidation of apical lobe of both lungs with sharp demarcated area of consolidation (Fig 1e). Histologically, the hyperplastic bronchiolar epithelial cells, BALT hyperplasia, lymphoid aggregates, and massive perivascular and peribronchiolar lymphoid hyperplasia in the interstitium of the lung were noticed (Fig 1f). The immunostaining of PCR positive tissues of lungs revealed strong cytoplasmic immunoreactivity in the bronchiolar lining epithelial cell, and in the exudates of air spaces (Fig 3a). The pathology along with the presence of bacterial antigens in lungs confirms the association of S. suis with pneumonia.

Out of 187 palatine tonsils tested, 11 (17.11%) were positive for S. suis. The tonsils of naturally infected pigs showed marked vascular congestion (6.4%), severe haemorrhagic tonsillar flaps (2.1%), and multifocal necrotic ulcers in the epiglottis area (2.6%). The lymphoid follicles in majority of the cases were depleted and crypts epithelium revealed degenerative changes with the heavy infiltration of inflammatory exudates (neutrophils) and necrotic debris in the lumen (Fig 2). The spleen showed depletion of lymphocytes in the white pulp area, and congestion and hemorrhages in the red pulp (Fig 2(e, f)). The lymph nodes also showed the depletion of lymphoid follicles along with severe congestion, haemorrhages and focal areas of necrosis in vascular compartment (Fig 2(c, d)). Grossly, the brain affected with S. suis showed no appreciable gross lesions. However, on microscopic examination, it showed meningitis characterized by the mild infiltration of mononuclear cells in the leptomeningeal space (Fig 2g) along with the perivascular cuffing with mononuclear cells in the brain parenchyma (Fig 2h).

A total of 41 DNAs were found to be positive for S. Suis in morbid tissues yielding 566bp (Fig 4). The sequences of S. suis isolates from Japan and the United Kingdom showed lesser divergence with Indian isolates as compared to Chinese isolates. The estimates of evolutionary divergence and subsequent phylogenetic tree analysis constructed between Indian S. suis isolates and related sequences were presented in Fig 5. Phylogenetic analysis of the 4 sequenced PCR products revealed the close resemblance with one Indian isolate and one Chinese isolate while the other three isolates showed resemblance with the isolates from Japan, United Kingdom and China. Further, two Indian isolates (MN993282, MN993283) were observed to emerge in the similar way (Fig 5).

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Discussion

Streptococcus suis is a swine bacterial pathogen of emerging zoonotic significance. The paucity of data on prevalence of S. suis in Indian pigs despite causing severe disease in humans, including meningitis, septicemia, and endocarditis, prompted us to take up the study on patho-epidemiological aspect of S. suis involving slaughtered pigs. Altogether, 664 morbid tissue samples were collected from slaughtered pigs of 4 states. The 41 (6.14%) cases were positive for S. suis by PCR followed by sequencing methods. The similar rate of prevalence has also been reported in earlier reports7,13. However, Devi et al.8 documented low prevalence of S. suis infections (1.41%) in pigs of Guwahati region. The degree of pathology in vital organs corroborated well with higher positivity in lungs (58.5%) followed by palatine tonsils (26.8%), spleen (7.3%), and lymph nodes (4.8%) indicating graded tissue tropism of S. suis. S. suis is recognized as a major respiratory pathogen of pigs and the same holds true in our study. S. suis has been the found as the major cause of bronchopneumonia in most of the earlier reports 4,7. In some countries, it is regarded as the primary agent for pneumonia4. It has also been reported in greater frequency in cases of acute haemorrhagic pneumonia together with the presence of S. suis bacterial colonies in those lesions. The acuteness of pneumonia could be due to the toxins and superantigens liberated by this haemolytic bacteria compromising the lungs defenses. Our observations also fall in line with the findings of previous report7. The association of S. suis in interstitial pneumonic cases has also been highlighted by others13,14,15. This might have happened due to prior injury by the viral pathogens like PRRS, PCV and Swine influenza virus, which might have caused immune suppression, thus favouring the growth of the opportunistic pathogen like S. suis for causing the pathologies. The association of S. suis in Enzootic pneumonic cases was documented in earlier report16. The higher positivity of S. suis DNA in lungs was corroborated with antigen distribution in tissues, and pathological changes. Next to lungs, higher numbers of cases were recorded in palatine tonsils. The upper respiratory tract of pigs, particularly the palatine tonsils is the preferred site for sampling to investigate the prevalence of S. suis infections in both live and slaughtered pigs17,18. In palatine tonsils, the pathology and intensity of S. suis antigen distribution matched well suggesting the palatine tonsils as potential portal of entry of this pathogen to the systemic blood circulation19.The detection of S. suis in spleen and lymph nodes indicated the site for its replication in the lymphocytes. In spleen and lymph nodes, S. suis antigens were demonstrated in the immune cells (lymphocytes) which might be due to the subsequent lymphogenous route to the draining lymph nodes and through the hematogenous route to the spleen and lymph nodes. Further, S. suis has also been shown to be present in nearly half of the submaxillary lymph nodes of pigs 17,20,21. In the present study, low positivity was recorded in the brain of slaughtered pigs as against natural cases although, S. suis is the primary agent for causing meningitis in post weaned piglets4. S. suis induced the classical lesions of meningitis characterized by meningeal vessels congestion, infiltration with mononuclear cells in the subarachnoid space, and the perivascular cuffing in the brain parenchyma were largely supported by the findings of previous worker22. It may be hypothesized that S. suis might have reached the brain via the blood after colonizing the nasopharynx and caused severe lesions in the brain. The amplified partial fragment of gdh gene sequencing data in our study matched with available gdh sequences at the NCBI database showing close homology with the sequences from Japan, United Kingdom and China, confirms the prevalence of S. suis pathogen in the Indian swine population. Moreover, further studies with considering larger fragments and the complete genome are needed to develop appropriate diagnostics and vaccines for the effective control of the disease.

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Conclusions

The present investigation reports 6.14% of prevalence of S. suis in the tissue samples of slaughtered pigs belonging to 5 localities of 4 states/union territory of India. A panel of pathological, IHC, and PCR tests was conducted on morbid tissue samples to confirm the prevalence of S. suis in naturally infected slaughtered pigs. The study suggested that there is a need for the public awareness, personnel particularly engaged in pig sector. Hence, continuous surveillance and monitoring of this zoonotic pathogen in different geographical locations of the country is warranted to understand the disease dynamics for its effective control.

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Figures

Fig. 1.:

The gross and microscopic lesions in lungs of pigs naturally affected with S. suis: a. Consolidated cranio-ventral lobes of lungs, acute suppurative bronchopneumonia; b. Note the presence of neutrophilic exudates within the lumen of the bronchiole, H&E x200; c. Heavy and non-collapsed lungs with rubbery texture showing multi focal reddish areas, acute interstitial pneumonia; d. Thickened pulmonary interstitium showing infiltration with marked infiltration of mononuclear cells, H&E x100; e. Clearly demarcated consolidation of apical and cardiac lobes of lungs in Enzootic pneumonia; f. Bronchial associated lymphoid tissue (BALT) hyperplasia with presence of inflammatory exudates within the bronchiolar lumen, H&E x100.




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Fig. 2.:

The histopathological lesions in pigs naturally infected with S. suis showing a. inflammatory exudates consisting of mononuclear cells mixed with neutrophils in the lumen of tonsillar crypt along with the degenerative changes in the crypt epithelium, H&E x200; b. blue stained bacterial colonies on higher magnification. H&E x200; c-d. mild to moderate depletion of lymphocytes in the white pulp of spleen, H&E x200; e-f. Depletion of lymphoid follicles of lymph node, H&E x200; g. Focal area of necrosis in the lymph node, H&E x200; h. meninges were congested, oedematous and infiltrated with mild infiltration of mononuclear cells. H&E x100.




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Fig. 3.:

Immunolocalization of S. suis antigen in different organs of pigs naturally infected with S. suis as positive dark brown signals a. Inflammatory exudates with bronchiolar epithelium, lungs b. Inflammatory exudates in the tonsillar cryptic lumen, tonsil c. Lymphocytes, spleen d. lymphocytes in the medulla, lymph node e. neurons of cerebrum, brain f. ependymal cells of the ventricles of cerebrum, brain. IHC x100. Immunoperoxidase staining (indirect method, ABC), Mayer’shematoxylin counters.




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Fig. 4.:

Detection of S. suis DNA in tissue samples of slaughtered pigs for gdh gene. L1: Marker-100 bp ladder, L2-Positive control, L3-Negative control, Lanes-4, 5, 6, 7 and 8 are positive samples (566 bp) ;




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Fig. 5.:

Phylogenetic analysis of Indian isolates of S. suis based on the gdh gene using the neighbor-joining program of MEGA 10.0.



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Table

Table 1.:

Prevalence of S. suis infection in naturally affected slaughtered pigs from 4 states of India.



PlacesPalatine tonsilsLungsLymphBrain nodeSpleenTotal No. of tissue samplesPositive cases% positivity
Lucknow (U.P)141411975535.45
Bareilly (U.P)5555525624.0
Guwahati (Assam)444421383318084.44
Delhi7896--73247156.07
Chandigarh (Punjab)464619-4615795.73
Total1872055652164664416.2

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Acknowledgments

The authors are thankful to the SERB-DST, Govt. of India for providing funds to carry out this research work and also Director, ICAR-Indian Veterinary Research Institute, Izatnagar for providing the necessary facilities.

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References

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